PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27372
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family E2F/DP
Protein Properties Length: 439aa    MW: 49689.6 Da    PI: 9.7432
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27372genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.11.5e-2374139171
   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
               rk+ksL+ll+++fl+l++++  +++ l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  OIT27372  74 RKQKSLGLLCSNFLSLYNREGIETIGLDDAARRL---GV--ERRRIYDIVNVLESIGVLARKAKNRYSWKG 139
               79*****************999************...**..****************************98 PP
2E2F_TDP74.51.1e-23206286171
   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
               r+eksL+lltq+f+kl+ +++ ++++l+e+ak L+ +      +++k+RR+YDi+NVL++++ iek     ++k+++rw g
  OIT27372 206 RREKSLGLLTQNFVKLFLCTDVDMICLDEAAKILLGDgrppaMTRTKVRRLYDIANVLSSMKFIEKthhpeTRKPAFRWLG 286
               689**************************************99999*********************99999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    
MAHFHPAKVN KTFLNGSFFF LKHEFSLSLY RLRFRILTKL GHTRTHTIEF IPSKKTIMSL  60
ASDPSKDSRS TYCRKQKSLG LLCSNFLSLY NREGIETIGL DDAARRLGVE RRRIYDIVNV  120
LESIGVLARK AKNRYSWKGF GAIPWTLQQL KEEGLKENVS GFDGSSSAKG SDDDDDDSDS  180
KPIVLSHTET LNPNSNSAAA SKSDNRREKS LGLLTQNFVK LFLCTDVDMI CLDEAAKILL  240
GDGRPPAMTR TKVRRLYDIA NVLSSMKFIE KTHHPETRKP AFRWLGMRER SDDKSVDTLG  300
ATESKKRVFG TELTNTTIKR SRGALPMDGI SDEATRKQLL IEVKCENLEN EIHCPKQEPG  360
LTASKKSYHF GPFAPPSLAQ AEASDADRMK RVHDWESLAS TYRPQYHNQA LKDLFAHYVE  420
AWKSWYLEVA GKNPIQLIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-116E2F/DP family protein