PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27392
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 136aa    MW: 15594.2 Da    PI: 8.143
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27392genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.73.3e-4352127277
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
               Cq+e+C+ad+++ak yhrrhkvCe+hskapvvl++g++qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk++
  OIT27392  52 CQAEQCTADMADAKPYHRRHKVCEFHSKAPVVLINGIQQRFCQQCSRFHQLAEFDEAKRSCRRRLAGHNERRRKTS 127
               **************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MEDNKWEGKR SMSEAGEEEE EHENAEDDNK RKRVLTLSGR KITGGGPALP SCQAEQCTAD  60
MADAKPYHRR HKVCEFHSKA PVVLINGIQQ RFCQQCSRFH QLAEFDEAKR SCRRRLAGHN  120
ERRRKTSYDS QGESSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-43SBP family protein