PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27403

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 318aa MW: 36549.5 Da PI: 9.782

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27403	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	17	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ OIT27403 17 RGHWRPAEDERLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62 899***************************.*********996 PP
2	Myb_DNA-binding	61.2	2.1e-19	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+lv a++ +G++ W++I+r ++ gRt++ +k++w+ + OIT27403 69 RRPFTEEEEERLVAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 113 679*****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MAEGGGSGDD TRSSCPRGHW RPAEDERLRQ LVEQYGPQNW NSIAEKLQGR SGKSCRLRWF 60 NQLDPRINRR PFTEEEEERL VAAHRIHGNK WALISRLFPG RTDNAVKNHW HVLMARKQRE 120 QSKNICGKRS YQLQHDNFLS DSKSPSYGFR RRNDNNNDNN SKTQLEGNYG SKISFFEFQN 180 PNKDRVFSIS TYSPEFFGRN NGSHLFRESS KFSDKKPLCQ NNLSFSLCGG YEGPAALGFP 240 NNYKRSNIQN PFSYSVPADH RINVSDGMTE GVVNIRDSTF SFNKMLRANI EQQQQHGEEA 300 KEKKDIPFID FLGVGISS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	2e-66	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT27403