PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27502
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24940.3 Da    PI: 9.8273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27502genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.4e-19351551
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51
              n+ +r+v +  R ++++KKAeELSvLCd+e+ +i+fs++  + +ye++s
  OIT27502  3 NEHRRSVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDkkNAVYEWPS 51
              889**********************************9722669***96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MVNEHRRSVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DKKNAVYEWP SRDKFKQLLM  60
RYLDKPLVER LKKLTTNEMF LMKEMDAKMK IIEQQKTEEK EMEQLFSQLY LGEKTVFDLD  120
KRQLIGVRNL AIKAKEKAVK RRIQLKLQDQ RLSSPINRIQ LRVAPLNVQD ERLQLPVEDP  180
LALRLAPLNV QDQRLQLPVD DPLALRLAPP EN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.14e-11MIKC_MADS family protein