PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27504
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 190aa    MW: 22478.4 Da    PI: 9.828
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27504genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.4e-19351551
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51
              n+ +r+v +  R ++++KKAeELSvLCd+e+ +i+fs++  + +ye++s
  OIT27504  3 NEHRRSVVLQERMETLFKKAEELSVLCDVEIGIIVFSPDkkNAVYEWPS 51
              889**********************************9722669***96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MVNEHRRSVV LQERMETLFK KAEELSVLCD VEIGIIVFSP DKKNAVYEWP SRDKFKQLLM  60
RYLDKPLVER LKKLTTNEMF LMKEMDAKMK KIEQQKTEEK EMEQLFSQLY LGEKTVFDLD  120
KRQLIGVRNF AIKAEEKAVK RRIQLKLQDQ RLSSPIDRIP LRVAPLNVQD QRLQLPVDDP  180
LALRLAPPEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.14e-11MIKC_MADS family protein