PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27508
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 234aa    MW: 26452.5 Da    PI: 4.4927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27508genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-1157971055
              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              r RR+r+ +++  Lrel+P +      K++ a+iL  A++YI+ Lq
  OIT27508 57 RWRRERVDKRIKALRELIPGC-----DKVDQASILDDAIKYIQALQ 97
              99******************9.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MEFNKENDVE KQQDLSQDEG EDEINLATEN GNYTDEMLNY YHSLHNVRES NSRNTTRWRR  60
ERVDKRIKAL RELIPGCDKV DQASILDDAI KYIQALQQLH QITSMRMGLM PQEAYMSQAG  120
MMQMPRMEPT NGIMANQTVI PPFALPTSNS SLQMVPQFQA PVCPQFLQST ACTMPLSPSF  180
FTTPSRTMTQ GCTASNPRGE LLREYEEAID YNNSGQGVQG ESSNSAFDST TEKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-15bHLH family protein