PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27539
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 223aa    MW: 24347.5 Da    PI: 7.3442
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27539genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.6e-302103197
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++e++ r+ +Pv+Gavg++++++++++q+++e++l
  OIT27539   2 SCNGCRILRKGCNENCILRQSLqgiesPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFESCGRTVNPVHGAVGLLWTGNWHVCQAAVETVL 102
               6***********************************************************************************************99876 PP

    DUF260  97 l 97 
                
  OIT27539 103 K 103
               5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLSSVPESQR  60
PALFQSLLFE SCGRTVNPVH GAVGLLWTGN WHVCQAAVET VLKGGVLRPL PEFSGVTALP  120
ESDSASEAND VDLFRSQSFN FRSKRKVMDE VAEDLDLGLS SGLPAKMTAT GGRMSRRTEK  180
RREATPSLNS DESDTTTLES GFMCHQNPQQ GQGDDTKLLR LFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-73LBD family protein