PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27591
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 512aa    MW: 57367.1 Da    PI: 6.6292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27591genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.32e-1051515032372
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               ++ LlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+ +s+ ++++ l   ++          a+++f+++sP++kf+h+t Nqa
  OIT27591 151 ITHLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMASRVINSWLGICSPLINYKS-------IHCAFQVFNNISPFIKFAHFTSNQA 244
               678*******************************9999**********************976644433.......467999******************* PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               Ilea+++ +rvHiiD di+qGlQWpaL++ La+R egp ++ +Tg+g     s e l etg++L+ fA++lg++fef++ + k++ ++++++L++++gEa+
  OIT27591 245 ILEAFHRRDRVHIIDVDIMQGLQWPALFHILATRIEGPSHVTMTGMGT----SMELLVETGKQLSCFAKRLGMSFEFHP-IGKKIGEIDISMLQIRRGEAI 340
               ************************************************....9**************************.7******************** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
               a+++    h+l+d +++  +    +++l+++lsP+v+++veqe+ + ++sFl+rf+ +l+yys++fdsl a l ++++ r++vE+ ll rei n++a  g 
  OIT27591 341 AIHWLQ--HSLYDATGPDWK----TMRLLQELSPRVITLVEQEIPL-GGSFLDRFVGSLHYYSTIFDSLGAFLQSDDSSRHSVEHGLLYREINNILAIGGP 434
               *****9..999999999888....**********************.789*************************************************** PP

      GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
               +r+ +  ++++Wr+ l++ GF +vp+s++a++qa+l+l++++ ++gy++ + +g+l lgWkd +L+++Sa
  OIT27591 435 ARNGE-DKFKHWRSELSRNGFMQVPMSTNAMAQAQLILNMFPpVHGYSLVQGDGTLKLGWKDTSLYTASA 503
               *7665.55**********************************************************9764 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MLKGGSEVIH QNGALDHIIQ QSNEQWDYAS FVGFPGITSA PSYPSKPITE NRGNNPERNE  60
LSRWVEHVTR QLIEDLPENE TQAMTYQDNI VPALLGELRP KKVARRNSSE NLGQQHQWNS  120
HDLATDENNM NRNETGAKGM NGLDDQGLNL ITHLLECAVA ISVDNLGEAH RMLLELTQMA  180
SPYGPSCAER VVAYFAKAMA SRVINSWLGI CSPLINYKSI HCAFQVFNNI SPFIKFAHFT  240
SNQAILEAFH RRDRVHIIDV DIMQGLQWPA LFHILATRIE GPSHVTMTGM GTSMELLVET  300
GKQLSCFAKR LGMSFEFHPI GKKIGEIDIS MLQIRRGEAI AIHWLQHSLY DATGPDWKTM  360
RLLQELSPRV ITLVEQEIPL GGSFLDRFVG SLHYYSTIFD SLGAFLQSDD SSRHSVEHGL  420
LYREINNILA IGGPARNGED KFKHWRSELS RNGFMQVPMS TNAMAQAQLI LNMFPPVHGY  480
SLVQGDGTLK LGWKDTSLYT ASASAWTSPN SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-141GRAS family protein