PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27602

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 436aa MW: 48919.8 Da PI: 8.8235

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27602	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H OIT27602 69 FICEVCNKGFQREQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	12.3	0.0005	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OIT27602 147 WKCDKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP
3	zf-C2H2	10.7	0.0017	177	195	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++++H + OIT27602 177 DCGTIFSRRDSFVTHRAFC 195 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MSNISSGNSS TAGAEEEYEE QDQQQMLPSS VHQEQDLPKK KRRKLPGNPD PSAEVIALSP 60 KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TSSDEIRKRR VYICPEPTCI 120 HHNPARALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TKEYKCDCGT 180 IFSRRDSFVT HRAFCDALTE ENNKVNQSLT STTGPSHTQV SEVMLNLPEI RNPNMKIPLK 240 PSPQALNIQT PTGPLLNMAG SMFTSPRNLA SSSFAGFQLS TNSSNMSSSA TALLQQAAQM 300 GATVSSMNSP IMVQKEYPSL FQSDHNHQTQ IGSSVHGFFG SMLQNGTQET LISELLNSNS 360 STAGDHQKTS RMQNQGWYNG LFNEIKINGE SGNDSLTLDF LGIGRTRQRN SHEMHQQQQQ 420 EMSFEQQKEM SSMWDD

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MSNISSGNSS TAGAEEEYEE QDQQQMLPSS VHQEQDLPKK KRRKLPGNPD PSAEVIALSP  60
KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TSSDEIRKRR VYICPEPTCI  120
HHNPARALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TKEYKCDCGT  180
IFSRRDSFVT HRAFCDALTE ENNKVNQSLT STTGPSHTQV SEVMLNLPEI RNPNMKIPLK  240
PSPQALNIQT PTGPLLNMAG SMFTSPRNLA SSSFAGFQLS TNSSNMSSSA TALLQQAAQM  300
GATVSSMNSP IMVQKEYPSL FQSDHNHQTQ IGSSVHGFFG SMLQNGTQET LISELLNSNS  360
STAGDHQKTS RMQNQGWYNG LFNEIKINGE SGNDSLTLDF LGIGRTRQRN SHEMHQQQQQ  420
EMSFEQQKEM SSMWDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	44	PKKKRRK
2	38	45	PKKKRRKL
3	39	43	KKKRR
4	39	44	KKKRRK
5	40	44	KKRRK
6	107	148	RKRRVYICPEPTCIHHNPARALGDLTGIKKHYSRKHGEKKWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	4e-95	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT27602