PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27663

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 272aa MW: 30908.9 Da PI: 6.1872

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27663	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	2.9e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien nrqvtfskRr+g+lKKA+ELSvLCdaevaviifsst kl+e+ss OIT27663 9 KLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSSTSKLFEFSS 59 569**********************************************96 PP
2	K-box	61	4.9e-21	95	188	8	100
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + l+++ +++ q+e++ Lk+e+++L+ +q +llG+dL+ L l+eL+ Le+qL+++l i+++K+ell++q+e+++++e+++ +e ++Lr+++ee OIT27663 95 AqLQTHMQKQEQKEVDSLKDELSKLKIKQLRLLGKDLNGLGLNELRLLEHQLNEGLLAIKDRKEELLIQQLENSRRQEERAVSESETLRRQVEE 188 23667778889********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KANELSVLCD AEVAVIIFSS TSKLFEFSST 60 SMKQTLSRYH RCVASTEISA IERKSEDNQQ PQPQAQLQTH MQKQEQKEVD SLKDELSKLK 120 IKQLRLLGKD LNGLGLNELR LLEHQLNEGL LAIKDRKEEL LIQQLENSRR QEERAVSESE 180 TLRRQVEELR GLFPLSASLP PPYLEYHPLE KKYPIIKEGE ESLDSDTACE DGVDDEDSNT 240 TLQLGLPTIG RKRKKPEQES PSSNSENQVG SK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	255	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	1e-54	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT27663