PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27707
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 37696.7 Da    PI: 6.8659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27707genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12153200355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+L+
  OIT27707 153 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLE 200
               6799************************.....9*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MEYHGFNQQW PINSFDELSA ISIAASFGEN LHESFISQPN FGLKRPAEMS QNIYHERPLK  60
NPKTIQSWNN SYENDHILSS HLINSNNYTN QVVNVKPKVE MTTMSSNSSI TFAADHQNMV  120
SQDSFANHNY MIKANYQGAK STVSTNGKLT QAQDHIIAER KRREKLSQRF IALSALIPGL  180
KKMDKASVLG DAIKYLKQLE EKVKTLEEQT KKKSVESVVF VKKYELYGDG ENSSSDENYS  240
SGTLPIDEPL PEIEARFSER DVLVRIHCEK KKGLVDKTVA EIEKLHLSVI NTCALSFGTS  300
ALDITIIAQM DEEFAMTVQD FVKNLRSALK MFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-60bHLH family protein