PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27738
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22051.3 Da    PI: 8.3629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27738genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.7e-171657243
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
              +ien+ nrq tfsk rn ++KKA+ELSv+++aev +i+  + 
  OIT27738 16 KIENQNNRQMTFSKCRNCVFKKANELSVMTGAEVGIIVCQQG 57
              79***********************************98665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MSTRLIKGRR SVRLAKIENQ NNRQMTFSKC RNCVFKKANE LSVMTGAEVG IIVCQQGSNP  60
YSFCHPDVNE AINKYVGEER PPSPSSPAIN DKYVQKFRKA NSRELNTRLN CLQDQLDFEL  120
NLKSKFMEMN KNAESQQEWF KGPIEKMNYT EASMLKEGLE DLLLKEVCLT EVFHQFLISL  180
VGSMTPSSLL VDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-20M-type_MADS family protein