PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27775
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 240aa    MW: 27638.9 Da    PI: 7.1945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27775genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-14110154347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+++m   Rt+ q+ s+ qky
         OIT27775 110 PWTEEEHRRFLMGLDKYGKGDWRNISKKMVISRTPTQVASHAQKY 154
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
METIFPTSSS WMMQQNKSSI WTKEENKLFE SAIAIYDENT PNRWFQVADM IPGKSVLDVM  60
MQYQELAADV CDIEAGLVPN PGYFASSDCG LQTFRKRGRS SDQERKKGVP WTEEEHRRFL  120
MGLDKYGKGD WRNISKKMVI SRTPTQVASH AQKYYQRQLS GCKDKRRPSI HDITTFHFVA  180
DDTSQNNINS KLHKFTTTTD VVKYWNSSSD EHLMSYGSST VAYPYELSSQ SWDGHGAIWD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195107RKRGRSSDQERKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.19e-82MYB family protein