PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27823

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 438aa MW: 49913.4 Da PI: 7.1628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27823	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	259	305	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er RR+++N++f Lr+++P K++Ka+ L Av YIk+L OIT27823 259 MNHVEAERIRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYIKEL 305 589**********************6.....5**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MENLISTTSS ISQPNALQKI LQYIVHSRQE WWVYSIFWQA TKDVNNRFIL SWGDGHFRGT 60 KDVSSAKTGH QLQKKSGLET NVTDSEWFYM VSMPRCFVAE DELVVRAYSS ATHVWLASHY 120 ELQLYNCERA KEADLHGIRT LVCIATPSGV VELGSSDVIQ ENWEFLQLIR SLFGSSNNNI 180 TSHLPINQVS LENHQKERCG SPQQEPDKRK QEMVTETAQF ENSDFDNESN VINNINRSRK 240 RAKKAGSSSI IKERSEMAMN HVEAERIRRE KLNHRFYALR SVVPYVSKMD KASLLADAVT 300 YIKELKAKVE DLESKIQSQK PKNNIIEQHD SHSASSSVFD PANNKSFSSS NGGRNGMEIE 360 VKIIGTEAII RVQCLDVNFP CARLMNVFRE MEFQIYHASV SSVKDLMLQD FVIRVPDEYS 420 TKDALKSAIM TRLCGIDN

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MENLISTTSS ISQPNALQKI LQYIVHSRQE WWVYSIFWQA TKDVNNRFIL SWGDGHFRGT  60
KDVSSAKTGH QLQKKSGLET NVTDSEWFYM VSMPRCFVAE DELVVRAYSS ATHVWLASHY  120
ELQLYNCERA KEADLHGIRT LVCIATPSGV VELGSSDVIQ ENWEFLQLIR SLFGSSNNNI  180
TSHLPINQVS LENHQKERCG SPQQEPDKRK QEMVTETAQF ENSDFDNESN VINNINRSRK  240
RAKKAGSSSI IKERSEMAMN HVEAERIRRE KLNHRFYALR SVVPYVSKMD KASLLADAVT  300
YIKELKAKVE DLESKIQSQK PKNNIIEQHD SHSASSSVFD PANNKSFSSS NGGRNGMEIE  360
VKIIGTEAII RVQCLDVNFP CARLMNVFRE MEFQIYHASV SSVKDLMLQD FVIRVPDEYS  420
TKDALKSAIM TRLCGIDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-69	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT27823