PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27873
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 531aa    MW: 58500.3 Da    PI: 4.712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27873genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.91e-1381505221374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               lv++L++cAeav++++++ a+al+ ++  la ++  +m+++a+yf+eALa+r+++        + p+++ e++ +++l++   f+e++P+lkf+h+taNqa
  OIT27873 150 LVHTLMACAEAVQQENFNVADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSIESSYTDVLQM--HFYETCPYLKFAHFTANQA 240
               689****************************************************........44666654445555544..4****************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...g 199
               Ilea+ ++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +v+++l+dl+ e L++++    
  OIT27873 241 ILEAFTNCNKVHVIDFSLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVTNSLADLDAEILDLRSsteT 341
               *********************************************************************************************99988899 PP

      GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.........eerikvErellg 291
               E++aVn+v++lhrll++++++e+    vL+ +k+++Pk+v++veqea+hn++ F++rf eal+yys++fdsle+++++ s         +++ ++++++lg
  OIT27873 342 EVVAVNSVFELHRLLARPGAVEK----VLNSIKQMNPKIVTIVEQEANHNASVFMDRFNEALHYYSTMFDSLESSVSTSStgltqpivnNQDLVMSEVYLG 438
               ***********************....************************************************666666666666669*********** PP

      GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               r+i+nvvaceg +r+erhetl++Wr r+++aGF p++l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  OIT27873 439 RQICNVVACEGVDRVERHETLSQWRVRMNSAGFDPAHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWR 522
               ***********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MDELLAVLGY KVKSSDMAEV AQKLEQLEMA MCTTLEDGIS HLSTDTVHKN PSDLSGWVQS  60
MLSELNNTSV PSNFDMIGSI EEKDLGESSS NIVINEQNRI ISDDDLRAIP GGAVFATESN  120
KRQRSCVPLT TDATTRPVVL VDSQETGVRL VHTLMACAEA VQQENFNVAD ALVRHIGILA  180
VSQSGAMRKV ATYFAEALAR RIYKIYPQDS IESSYTDVLQ MHFYETCPYL KFAHFTANQA  240
ILEAFTNCNK VHVIDFSLKQ GMQWPALIQA LALRPGGPPA FRLTGIGPPQ PDNTDALQQV  300
GWKLAQLAET IGVEFEFRGF VTNSLADLDA EILDLRSSTE TEVVAVNSVF ELHRLLARPG  360
AVEKVLNSIK QMNPKIVTIV EQEANHNASV FMDRFNEALH YYSTMFDSLE SSVSTSSTGL  420
TQPIVNNQDL VMSEVYLGRQ ICNVVACEGV DRVERHETLS QWRVRMNSAG FDPAHLGSNA  480
FKQASMLLAL FAGGDGYRVE ENDGCLMLGW HTRPLIATSA WRLKAAGDAE L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein