PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27890
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 254aa    MW: 29241.9 Da    PI: 6.3056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27890genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-08135180555
               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +Y+k Lq
  OIT27890 135 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATFKYVKFLQ 180
               67889*******************955......9*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MASLSYYSNS NSNLEPNMQQ LNEFLFDFNY DQSYFDPFFD SNEFVFPALM EPNCFVPEIQ  60
EYYSDFQMSN PKRQKVFELD SNCHHQDIIT QGNLSNGPIY QSFSFPSPPV FNSGCCSHQV  120
VEKKGNNNEK KMSAQSIAAR QRRKKITEKT QELGKLIPGG HRMNTAEMLQ ATFKYVKFLQ  180
AQVGLLEFMG SHQQENGKSY ETPDLQKLVG SALVQEKLYS SDNCLVPKVF LEELDKNHEF  240
QHSQSVHQVK KLIT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-24bHLH family protein