PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27978
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 172aa    MW: 19712.3 Da    PI: 4.4069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27978genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.4e-1818105297
               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               fk+   +    + +l++p  f++ ++g+   +   +led+ g+sW+v +  +k+++ +++ +GW +Fv  n+L+ g+f++F++ g+s f  +vk++
  OIT27978  18 FKIY--HPQICNFQLRIPPAFLKFFNGD--IPSNYMLEDLAGESWKVVV--EKNDNDFFFMGGWPDFVWNNNLEFGEFLTFSYAGNSHF--YVKIY 105
               5555..66677899********999777..4557***************..**********************************9999..88876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MVTSIEQVTI PDHLPEFFKI YHPQICNFQL RIPPAFLKFF NGDIPSNYML EDLAGESWKV  60
VVEKNDNDFF FMGGWPDFVW NNNLEFGEFL TFSYAGNSHF YVKIYGINGS LKRDVTAINE  120
PELHPLDEEI VHEIGSSARP VDQALNESGD LVVSVTSFDI VIKPSYIRKS AW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-18B3 family protein