PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28074
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 241aa    MW: 27079.6 Da    PI: 6.7342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28074genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000223685154
              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
              +r  + erE+  R+++N+ f  L   l  +     + + Ka+iL +A +++k++
  OIT28074 36 KRIHKAEREKLKREHLNELFLGLANALELS----EQMNGKASILNEAARFVKDM 85
              688899*********************998....68899*********999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MDTESPAPIL EKDTKAVETS LDSSHLGKKN QKKAPKRIHK AEREKLKREH LNELFLGLAN  60
ALELSEQMNG KASILNEAAR FVKDMLSHIK HLRTENTTLL SESQYLTVEK KELQDETSAL  120
EAEIGRLQNE VKAREAKTNL DLNLAPPEIQ HPEFALQNNY MSLPASEHAF QDTQIMNPAY  180
VFPFSSNSHV YPAPDATKST ATPTSTVKKP QARYPTPADV WPSQIFEKRP RLLGQEVQDG  240
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.23e-45bHLH family protein