PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28148
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26445.4 Da    PI: 4.6055
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28148genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182878656
              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +ft+eq++ Le++F+ + ++  +++ +LA+ lgL+ rqV +WFqN+Ra++k
  OIT28148 28 RFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 78
              7*************************************************9 PP
2HD-ZIP_I/II117.38.4e-3826115392
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   +r+++eqvklLE++F+ e+kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y +Lk+++d+l+ + ++L++e+e+L  +l+
     OIT28148  26 GKRFTDEQVKLLESMFRLETKLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEHEYIVLKAKFDNLNMQFQSLKTEKERLLIQLE 115
                  58**********************************************************************************998775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MEPEESQELE KSKSPNSLKK KSTENGKRFT DEQVKLLESM FRLETKLEPR KKLQLARDLG  60
LQPRQVAIWF QNKRARWKSK QLEHEYIVLK AKFDNLNMQF QSLKTEKERL LIQLEILNDQ  120
LENNLARGSR SEDLKDNELY TSTENGGTDL ELKDSPGCSN ARFDHKRVKE DQDDDTAEET  180
DKYFTPKEEA EFLNLEELGD NSLEQWCVGL GSSFNQSCDN SELWDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-39HD-ZIP family protein