PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28267
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family E2F/DP
Protein Properties Length: 345aa    MW: 38006.4 Da    PI: 8.2358
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28267genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-2788170271
   E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
               ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OIT28267  88 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdptnghessdqrqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 170
               689********...*****999*******************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MVNNLEEGGK NPSEVSRRSW GPTTTVSGQS VSTSGSVGSP SAVATPGSEN TFVRLNNLDI  60
HADDAASQGA AANRKKKRGQ RATGGDKSGR GLRQFSMKVC EKVESKGRTT YNEVADELVA  120
EFSDPTNGHE SSDQRQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTDANDIE  180
ELKAERLSLR NRIEKKAAYL EELEEQYVGL QNLIKRNKQL YGSGNAPSGG VALPFILVQT  240
RPHATVEVEI SEDMQLVHFD FNSTPFELHD DNYVLKAMKF CGRQKTDVVA QNISADGAEG  300
SSSSLANMFQ HQISHTSVSN TPGRRPTPTS PPLPGILKAR IKHEH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-129E2F/DP family protein