PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28319
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 105aa    MW: 12188.1 Da    PI: 4.7631
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28319genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind78.69.9e-252886260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl k+y ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+Y
      OIT28319 28 FLLKTYMLVEDPATDDVVSWNSDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTY 86
                  9*********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    
MMVVVEEVQS DEKSLLLEYV RKSSPSPFLL KTYMLVEDPA TDDVVSWNSD GTAFVVWQPA  60
EFARDLLPTL FKHSNFSSFV RQLNTYVCYP SIYCLKLFIR IECLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-35HSF family protein