PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28367

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 368aa MW: 41360.6 Da PI: 7.425

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28367	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl OIT28367 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	46.3	9.4e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E l+++++ lG++ W+ Ia++++ gRt++++k++w+ OIT28367 67 RGSFSHQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGHHTCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SHQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHG 120 TLSDFSMIFP NSLTTTNPNP SFENFYPLNS TPINLMPIST NSPLILQVDH QMNNNQLNGD 180 LNLNPVVPSL INPLSFDSIS NDPTWFNFNY PHPQHDLDNY NQNVLKQDNS DSMLTSNISF 240 NYTNGENFMD SRNAAIKTHQ DLLMQVPLLP KLSEKIKGNG GIVESIPPAA SQQIESMVVN 300 SLPCTFPNGY IHPHYGMNGV HEMEQIECMH MSSFPSSSSS SPSSSKSSPS SCNTQFVMNP 360 NLHTSWDS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGHHTCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SHQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHG  120
TLSDFSMIFP NSLTTTNPNP SFENFYPLNS TPINLMPIST NSPLILQVDH QMNNNQLNGD  180
LNLNPVVPSL INPLSFDSIS NDPTWFNFNY PHPQHDLDNY NQNVLKQDNS DSMLTSNISF  240
NYTNGENFMD SRNAAIKTHQ DLLMQVPLLP KLSEKIKGNG GIVESIPPAA SQQIESMVVN  300
SLPCTFPNGY IHPHYGMNGV HEMEQIECMH MSSFPSSSSS SPSSSKSSPS SCNTQFVMNP  360
NLHTSWDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	8e-79	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT28367