PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28468
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 196aa    MW: 21361.2 Da    PI: 6.4623
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28468genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.72e-3891101101
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkCa dC++apyf+ e+ p+kfa++hk+FGasnv+kll ++p  +r da+ +++yeA+ar++dPvyG+v+ i++lqqq++ l+a+l ++k++
  OIT28468   9 PCGACKFLRRKCAIDCIFAPYFCTEEgPAKFAAIHKVFGASNVSKLLLHVPVADRCDAVVTIAYEAQARIKDPVYGCVANIFDLQQQVAYLQAQLMQVKAQ 109
               7**********************99989********************************************************************99987 PP

    DUF260 101 l 101
               l
  OIT28468 110 L 110
               5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MATGTGSSPC GACKFLRRKC AIDCIFAPYF CTEEGPAKFA AIHKVFGASN VSKLLLHVPV  60
ADRCDAVVTI AYEAQARIKD PVYGCVANIF DLQQQVAYLQ AQLMQVKAQL AQSFINSSNS  120
NIPQWSNNNM ESISGLMTSS LPANNPTNYN CFKSNSSPQS SLESSDNCSD IGMNIQDIQS  180
LDQLLYQTYT SRNIGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.18e-51LBD family protein