PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28509
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 542aa    MW: 60592.4 Da    PI: 6.0895
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28509genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.95.4e-1291735422374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               +elL +cAeavs+ d + a+ l++ l++++s  g+pm+Rl ay++e+L+arl++s+s +yk+l+++e +   sse l+++++ ++++P++kf+++ aN  I
  OIT28509 173 KELLDACAEAVSDADISTAEVLMNILEQRVSVFGEPMERLSAYVLEGLRARLLSSGSIIYKKLKCKEPT---SSELLSYMQVIYNMCPYYKFAYMSANVVI 270
               78999***************************************************************9...9**************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                ea+ +e+rvHiiDf+i qG QW+ Ll+ La Rp+gpp lRiTgv++++s   +   l+ +gerLa++A+++gvpfef+  +a +  +++le+L+v++gEa
  OIT28509 271 REAMTNENRVHIIDFQIAQGSQWMFLLHDLARRPGGPPFLRITGVDDSQSAhaRGGGLQLVGERLAEVAKSCGVPFEFRG-AALSGCEVQLENLHVRHGEA 370
               ***********************************************9988889999***********************.8999**************** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v++veqe+++n+++Fl rf e+l+yy+a+f+s++a  pr++++ri+ E+++++r++vn++aceg
  OIT28509 371 LAVNFPYMLHHMPDESVSTINHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFLPRFRETLDYYTAMFESIDAARPRDDKQRISAEEHCVARDVVNIIACEG 471
               ***************************************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               a+r+erhe ++kWr rl++aGF+p pls ++ ++++ +l++++ + yr  e++g+l+lgWk+r+L + SaWr
  OIT28509 472 ADRVERHELFGKWRLRLMMAGFTPCPLSPSVGETINGVLKEYSPN-YRFAESEGALYLGWKNRALATSSAWR 542
               *******************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MQASQRPQMS GGVHGLYNQP VQQGQQYYAP YHFKNNNCYN TSSVTQFAFQ TQNEHFFTLD  60
SLPATDYVVY DSPPALSVSS NRSPLSPQCS QSYMSDLHHS SDNNTCGSPF SGCSGVDDGD  120
LKHVLRELEN KLLGPESDTD DSCSCSFNDV VSKPSSLTRW NRVLDMAPSL NLKELLDACA  180
EAVSDADIST AEVLMNILEQ RVSVFGEPME RLSAYVLEGL RARLLSSGSI IYKKLKCKEP  240
TSSELLSYMQ VIYNMCPYYK FAYMSANVVI REAMTNENRV HIIDFQIAQG SQWMFLLHDL  300
ARRPGGPPFL RITGVDDSQS AHARGGGLQL VGERLAEVAK SCGVPFEFRG AALSGCEVQL  360
ENLHVRHGEA LAVNFPYMLH HMPDESVSTI NHRDRLLRLV KSLSPKIVTL VEQESNTNTA  420
PFLPRFRETL DYYTAMFESI DAARPRDDKQ RISAEEHCVA RDVVNIIACE GADRVERHEL  480
FGKWRLRLMM AGFTPCPLSP SVGETINGVL KEYSPNYRFA ESEGALYLGW KNRALATSSA  540
WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein