PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28652
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 261aa    MW: 30399 Da    PI: 5.6481
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28652genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.75.2e-2587176190
      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
               +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++  +++++    + + tr gC a l+v ++ ++kw+vtk+++eHnH+l+
  OIT28652  87 DFYMAYGRQIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDR-VlpPPPATREGCPAILRVALR-ESKWVVTKFVKEHNHALM 176
               6******************************************98883332.2448899**************.9***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGFYKSDVAM GSPSSPAFGL DERNFPPVES NDDHDYFDEE LTTDMDMYVA EEDDKCLGHS  60
NGEQTPSDDA IEPQIGMDFN SRDDARDFYM AYGRQIGFTV RIHHNRRSRI NNVVIGQDFV  120
CSKEGFREKK YIHRKDRVLP PPPATREGCP AILRVALRES KWVVTKFVKE HNHALMSPSK  180
VPWRGSTKKL VSQDEKDQRI RELTLELYNE RQRCKRRCAA YQEQLQTLLK FIEDHTDHLS  240
RSVEEAVQRV KELDERLEES D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216RQRCKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.13e-37FAR1 family protein