PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28689

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 804aa MW: 89937.7 Da PI: 5.8963

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28689	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.2	3.7e-36	155	232	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++Cead+se+k yh+rh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++ OIT28689 155 RCQVPDCEADISELKGYHKRHRVCLRCANATAVFLDGQSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 232 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MHNNQASSPS QTGAPTQFRN TQMTLSGTLD DPTISSSLFD WSDFLEFNLD EEQLNISFDD 60 PLLHPPETET EPAAPLILPS SEDSPQSQEA DADTDTGRVR KRDPRMACSN FLAGRIPCAC 120 PELDEKMEEE ELGGIGPGKK RARTLRASSG AAGSRCQVPD CEADISELKG YHKRHRVCLR 180 CANATAVFLD GQSKRYCQQC GKFHILSDFD EGKRSCRRKL ERHNNRRRRK ATDSSKMSVE 240 KESRQVRTAD DISGDDDNVK DSTCTGSQLG EREILLESEG HVPIGSTQGI QNNQSDSFTA 300 SGETQGDAEK ENSKNSLSPS YYDNKSAFSS MCPTGRISFK LYDWNPAEFP RRLRHQIFQW 360 LASMPVELEG YIRPGCTILT VFVAMPTFKW GKLLEDPAAH LYEFIASPGN MLRGRGSFLV 420 YLNNMVFRVT TGENSVVKVK LKGPAPKLKS IHPTCFEAGK PMEFFACGSN LMQPRFRFLV 480 SFGGRYLGND ISVTPSCSKN EGGSGSMEHQ LLKIHVPRTE ADLFGPAFVE VENESGLSNF 540 IPILIAEKDI CAEMEEIQRK FCSGGSEHTA VCSPCEDSTC RKSEFSEFML DVAWLLREPS 600 SENVQIVASV QMQRFNYLLN VLMESQSTII LKRVLPYFEN MVNKNLLAGI TDAEMRLFQR 660 NIYEKNNLLK ERLQLKEYCA GDAGQIMQEA NTSTEIFQNH MKSVFPVNNE DVEVPHEHNL 720 EFGSAYWEST STVPLLDAEL ALRVKEQSGK PCGFLVRKTV LTSRTLVFVI TGFAVCLGLC 780 ATFLHPRKVG EFAMTIRRCL FDNS

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MHNNQASSPS QTGAPTQFRN TQMTLSGTLD DPTISSSLFD WSDFLEFNLD EEQLNISFDD  60
PLLHPPETET EPAAPLILPS SEDSPQSQEA DADTDTGRVR KRDPRMACSN FLAGRIPCAC  120
PELDEKMEEE ELGGIGPGKK RARTLRASSG AAGSRCQVPD CEADISELKG YHKRHRVCLR  180
CANATAVFLD GQSKRYCQQC GKFHILSDFD EGKRSCRRKL ERHNNRRRRK ATDSSKMSVE  240
KESRQVRTAD DISGDDDNVK DSTCTGSQLG EREILLESEG HVPIGSTQGI QNNQSDSFTA  300
SGETQGDAEK ENSKNSLSPS YYDNKSAFSS MCPTGRISFK LYDWNPAEFP RRLRHQIFQW  360
LASMPVELEG YIRPGCTILT VFVAMPTFKW GKLLEDPAAH LYEFIASPGN MLRGRGSFLV  420
YLNNMVFRVT TGENSVVKVK LKGPAPKLKS IHPTCFEAGK PMEFFACGSN LMQPRFRFLV  480
SFGGRYLGND ISVTPSCSKN EGGSGSMEHQ LLKIHVPRTE ADLFGPAFVE VENESGLSNF  540
IPILIAEKDI CAEMEEIQRK FCSGGSEHTA VCSPCEDSTC RKSEFSEFML DVAWLLREPS  600
SENVQIVASV QMQRFNYLLN VLMESQSTII LKRVLPYFEN MVNKNLLAGI TDAEMRLFQR  660
NIYEKNNLLK ERLQLKEYCA GDAGQIMQEA NTSTEIFQNH MKSVFPVNNE DVEVPHEHNL  720
EFGSAYWEST STVPLLDAEL ALRVKEQSGK PCGFLVRKTV LTSRTLVFVI TGFAVCLGLC  780
ATFLHPRKVG EFAMTIRRCL FDNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	229	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT28689