PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28779
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 312aa    MW: 34341.8 Da    PI: 5.555
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28779genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.23.9e-17234268135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C +Cg+  Tp+WR gp g+ktLCnaCG++y++ +l
  OIT28779 234 CKHCGSEMTPQWRTGPMGPKTLCNACGVRYKSGRL 268
               *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
METPDCAAAG YFAHSIDYQF EHKPFDSTNN NINNNHITVD DLLDFNKENE VMTDAFFDTI  60
TGANSADSSS LTVVDSCNSL VSGGEGHFDG NLSYRSFTDT PFLSSELCVP HDDLAELEWL  120
SNFVEESFST EDLQNLQFIP VTEAPSTTTT STDNSSSGTV ISSGNYHNTT GSNSPPAFPC  180
KSRSKRSRAA PCDWSSRLLL LPPATASSLD SNSSLKTAPC RMRESTDTNT GRKCKHCGSE  240
MTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF VSTEHSNSHR KVIELRRQKE  300
LRTNQIHQLQ ML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-62GATA family protein