PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29022
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 241aa    MW: 26773.3 Da    PI: 8.227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29022genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-1096140554
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               h+++Er RR+ri +++  L+el+P++      K++ a++L +  +Y+k L
  OIT29022  96 HSIAERLRRERISERIKALQELVPSC-----NKNDRAAMLDEILDYVKFL 140
               99***********************8.....6****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MASNPPEGYA AGDDFLEQIL LRSFCSEART RSNEHGKFIS RSRTFAISCS SPHCLQVHQV  60
QPSQGQPASS TAVTVPHPPA IRPRVRARRG QATDPHSIAE RLRRERISER IKALQELVPS  120
CNKNDRAAML DEILDYVKFL RLQVKVLSMS RLGGASAVAQ LVADIPLQSV ETSLSRQYFS  180
GESRSNQHVW EKWSNAETEQ EVAKLMEEDV GAAMQFLQSK SLCIIPISLG TLIYPTQQTD  240
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-56bHLH family protein