PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29047
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20159.9 Da    PI: 8.6749
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29047genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF374.4e-121661247
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
              +ie k     tfskRr+gi KK  EL   C+++v +i+ s+tgk +
  OIT29047 16 KIEKKDDLFATFSKRRAGIYKKSGELNAECGVDVGIIVSSPTGKPF 61
              6777777789*********************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MVSKKTKGRQ KILMKKIEKK DDLFATFSKR RAGIYKKSGE LNAECGVDVG IIVSSPTGKP  60
FSFFHPTDDA IIARFQNPDM QLSEITRLIA ANARNNVNYL NSRLEEFDTI KDVVTAQTRF  120
YDKMTETRES GWWESIEQLN ADEVTKFETW LKTVVSIMNN CLNQLEIGAS SSAPNYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.18e-26M-type_MADS family protein