PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29067

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 523aa MW: 57038.6 Da PI: 8.7051

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29067	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.7	3e-42	163	238	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ OIT29067 163 CQVQGCGKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 238 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MESWSYLSGG KGFISEESVS VNDGMGRAKN GLMGWELKTP SSYVMCSSQE GSTNNQGFPE 60 LGSQNLMRKT MFSDQSFFGS VAASPSAYSG EDKSKSSSKL SSSVVESNSR DSSLIDLKLG 120 RFPDQIDANV YKSPKIMPNV SCAESIVPAK RMRAGGVSSH PFCQVQGCGK DLSSCKDYHK 180 RHKVCEVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTG 240 TRFRGTSFAT SSFACQDILG GRFLHQPKFE MNDWYKNVKG EDGVERSPQL AMPFSNGQLQ 300 PKSVFTSYHA KKQCQPLHDE GQPDVTTSRI NESTISSLHD MRGSDFVSPS LFHTTSSGSE 360 VLHVLDTSST IHGLSGISNS SNALSLLSSQ SRGSSNHSTV FRAAHPLISP SNNSRYSVTQ 420 ASKEVLGLSP QDSAGRMSNT FNSSGVNSAE GGLDQILFPS NTCGVDGIIQ GPNFVNHKDQ 480 LSCEDGPTID LLQLSSQLQR VEHQRLSMQV KQGSNTFPGL RIT

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MESWSYLSGG KGFISEESVS VNDGMGRAKN GLMGWELKTP SSYVMCSSQE GSTNNQGFPE  60
LGSQNLMRKT MFSDQSFFGS VAASPSAYSG EDKSKSSSKL SSSVVESNSR DSSLIDLKLG  120
RFPDQIDANV YKSPKIMPNV SCAESIVPAK RMRAGGVSSH PFCQVQGCGK DLSSCKDYHK  180
RHKVCEVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTG  240
TRFRGTSFAT SSFACQDILG GRFLHQPKFE MNDWYKNVKG EDGVERSPQL AMPFSNGQLQ  300
PKSVFTSYHA KKQCQPLHDE GQPDVTTSRI NESTISSLHD MRGSDFVSPS LFHTTSSGSE  360
VLHVLDTSST IHGLSGISNS SNALSLLSSQ SRGSSNHSTV FRAAHPLISP SNNSRYSVTQ  420
ASKEVLGLSP QDSAGRMSNT FNSSGVNSAE GGLDQILFPS NTCGVDGIIQ GPNFVNHKDQ  480
LSCEDGPTID LLQLSSQLQR VEHQRLSMQV KQGSNTFPGL RIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-45	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT29067