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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT29075 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 301aa MW: 34698.2 Da PI: 4.3921 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 56.7 | 4.2e-18 | 81 | 134 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k
OIT29075 81 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYK 134
45578899*********************************************9 PP
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| 2 | HD-ZIP_I/II | 123.6 | 9.2e-40 | 80 | 171 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+e+Lr+e++
OIT29075 80 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYKTKLLEKDYDVLKASFDKLKDDYDTLFKENENLRNEVD 171
69**************************************************************************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 301 aa Download sequence |
MEVGRVNEGS NMTTTNTVLP SEVLHNLWMS NSSPSFHGPT SMVNFEDGRG EITKERPFFS 60 PNDKEETSND DYDSCFHQPE KKRRLLPNQV QFLEKSFEVD NKLEPERKVQ LAQELGLQPR 120 QIAIWFQNRR ARYKTKLLEK DYDVLKASFD KLKDDYDTLF KENENLRNEV DLLKENLLRR 180 EKGKENSEQS EPINPIDAEE AQKSSPIVVI SEVPSIQKVV CKQEDASSAK SDVIDSDSPH 240 YTDGNHSSNA FEPEPSDFSQ DEDDNLSKSF LCFPEIGDQI QANSCNLGFQ IEDQPCWFWQ 300 Y |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 2e-44 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT29075 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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