PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29412

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 247aa MW: 28328.4 Da PI: 8.652

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29412	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++++ G g+W++ + g+ R++k+c++rw +yl OIT29412 14 KGAWTAEEDMLLTNYIQLNGEGNWRSLPMNAGLLRCGKSCRLRWVNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	54.7	2.4e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++Ed+l+++++ +lGg+ W++Ia +++ gRt++++k++w++ OIT29412 67 RGNFSPDEDDLIIRLHSLLGGR-WSLIAGRLQ-GRTDNEIKNHWNTN 111 89******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRAPCCSKV GMRKGAWTAE EDMLLTNYIQ LNGEGNWRSL PMNAGLLRCG KSCRLRWVNY 60 LRPGTKRGNF SPDEDDLIIR LHSLLGGRWS LIAGRLQGRT DNEIKNHWNT NLLKKLKAAG 120 IQPKPQKLTA KRTKDKRRRA RKAKKPEGEM EKDEAVKKIQ SNIITMLSSE EVDNNKEEEK 180 IQEPFIPSSL SSSVQVEEKE NEIYEKIQLF DELLNGCDYS TECLEPTSSC NMLKEVYTEY 240 FQLLSEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	1e-61	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT29412