PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29429

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 320aa MW: 36366.1 Da PI: 7.4193

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29429	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q G+g +W + + ++g++R++k+c++rw++yl OIT29429 14 RGPWSPEEDAKLKSYIEQNGTGgNWIALPPKIGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	36.2	1.4e-11	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ OIT29429 70 GFSDEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPPKIGLNRC GKSCRLRWLN 60 YLRPNIKHGG FSDEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK 120 QRQKQGSRKG KEINSNMVIS NNNNNNQFPC WPELPILQPI PYSNDEPRFN DHSSIRKLLI 180 KLGGKFSDEY QPINEATNPQ YPMDNSLLMH HNSPINLISS APIDNVLANA QYNMDRAASS 240 FTAELEHMIQ NNQQKLDGLE FLYDQDMLID KSASTSGGSM DWDAMNPFVF PLPPINDEGF 300 QQGVIIQEGA FDELRYPMAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-77	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT29429