PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29762

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27667.5 Da PI: 9.1346

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29762	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s OIT29762 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	101.2	1.4e-33	81	173	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++++++++ ++e+ +Lk+++e Lqr+qR+llGedL++Ls k+L+qLe+qLe slk+iRs+K++++l+q+ +lq++e++l e nk Lr+klee OIT29762 81 SQSATDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGTLSTKDLEQLENQLEASLKQIRSRKTQFMLDQLADLQQREQMLAESNKHLRRKLEE 173 4688999***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SSMMKTIEKY QRCSYATLEA SQSATDTQNN YHEYLRLKAR VELLQRSQRN LLGEDLGTLS 120 TKDLEQLENQ LEASLKQIRS RKTQFMLDQL ADLQQREQML AESNKHLRRK LEESAAGIPL 180 RLCWEDGTQA MQVNRLPQTE GFFQPLGLTS SPQFGYNHVG TDEVNGGASA HNMNGFIPGW 240 ML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.2	1e-97	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT29762