PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30000

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 190aa MW: 21020.4 Da PI: 8.8539

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30000	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.4	5.9e-44	51	150	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la +++ OIT30000 51 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQEVPVNKRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSHLQMQLAIAQAD 150 7**********************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MKGLQNVVGK ESHGRCFKIK EPLQKVVVLL QYCVGEILNG NTSNIEPGNS PCASCKLLRR 60 RCAKDCIFAP YFPSDDPHKF AIVHKVFGAS NISKMLQEVP VNKRADAVSS LVYEANARMR 120 DPVYGCVGAI SYLQNQVSHL QMQLAIAQAD ILSSTNVISN SMNKIMYYSL KIRFINFSGE 180 DGDLVSQPSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-69	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT30000