PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30020
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 238aa    MW: 26251.8 Da    PI: 10.0101
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30020genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1934.4e-60622001139
    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101
               sv k+kaal+ ++++ptf+ ldsg +kl+r+G ++l++ ++++erkydWek q falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+ +P +d
  OIT30020  62 SVVKGKAALSAEPRLPTFSRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKGQLFALSATEVGSLISIGTRDSCEFFHDPSMLSSNAGQVRKSLSFKPNAD 162
               799************************************************************************************************** PP

    Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
               GsG+fv+lsv n+ +k+n++++vPv+ aefav+r++++
  OIT30020 163 GSGYFVSLSVVNNNIKTNDRLTVPVTIAEFAVMRTAFS 200
               ***********************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MHSEDKPSNM MNQLLHKRLP GEGVRDSIWQ HAINSLAGFS TVRQNIVADA GKLTGRVFAP  60
YSVVKGKAAL SAEPRLPTFS RLDSGGVKLN RRGVIMLTFW PSVGERKYDW EKGQLFALSA  120
TEVGSLISIG TRDSCEFFHD PSMLSSNAGQ VRKSLSFKPN ADGSGYFVSL SVVNNNIKTN  180
DRLTVPVTIA EFAVMRTAFS FALPHIVGWD RFTNQSSESV SQSPSKVVPQ LMEAEWDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-88Whirly family protein