PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30042

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 296aa MW: 32665.2 Da PI: 7.0094

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30042	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	204	226	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H OIT30042 204 HECSICGAEFTSGQALGGHMRRH 226 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MILENKEYTM EFVQMQENVD HDHMNMVIKR RRTKRPRPPS PLALTIATSS CSTVEGASGD 60 GGSGGELDGH VANSSSLSNI GIDQFAKNSD EEEDMANCLI LLAQGHNQRS QSSSLDVFQC 120 KTCNRCFSSF QALGGHRASH KKPKSTTLEE IKNSKPIEQV ATCLKLNDHH VTTLSLQIPN 180 NNNNNNNNNN NNNNSNCKNK TRVHECSICG AEFTSGQALG GHMRRHRPLP NSITIAASST 240 SNEESHDQTK STRNFLSLDL NLPAPEDDHR EITKFSFASK EQVIVFSASP LVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	38	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-51	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT30042