PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30061
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 208aa    MW: 23519.4 Da    PI: 5.307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30061genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-054668123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C+ C++ Fs+   L  H++ H
  OIT30061 46 YRCSFCKRGFSNAQALGGHMNIH 68
              9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MTSSPYYSKY LFIPSSQPYC PFISMEIDPS NSEKSDELGL GHVKFYRCSF CKRGFSNAQA  60
LGGHMNIHRK DRARLREFSS ENLLSLDITN SVNPPLPPPP PAPSNEDSLQ HEVSYNETIS  120
SPSKRPCVNT SEENDHNKVN YDDHNHEVII GDVLQLPLFT KTPLIKEASN CVDRQVEEKG  180
MQLNPVSELD LELRLGMEPP HESMMKTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-15C2H2 family protein