PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30124

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 371aa MW: 42273 Da PI: 6.7586

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30124	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H OIT30124 79 CSydGCGKTFIDAGALRKHSHIH 101 78889**************7766 PP
2	zf-C2H2	16.5	2.4e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H OIT30124 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	22.4	3.2e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk Fs nL++H++tH OIT30124 136 YVCPheGCGKAFSLDFNLRSHMKTH 160 99**********************9 PP
4	zf-C2H2	16.3	2.8e-05	166	191	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgk++ + + Lk+Hi + H OIT30124 166 HICPypECGKRYAHEYKLKNHIASsH 191 679999****************9988 PP
5	zf-C2H2	16.1	3.1e-05	229	254	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+ks+ + + L+ H+r+ H OIT30124 229 YSCPyeGCDKSYIHEYKLNLHLRNmH 254 99*********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
METHMAHHLF ERRPIYKSKA PAAKWFKEWV PQDVVATGGK CYLLKWVNEA TLKALKEKPK 60 EPEVPVPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS 120 SKLKRHFLIH TGERDYVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE 180 YKLKNHIASS HQKNSTPDAP KYTPPVEKPM KTPKSSSAAY ASSSSDRPYS CPYEGCDKSY 240 IHEYKLNLHL RNMHPGHFPE DNAKNAQSTA DNEMDEGSDQ DAYAAKRGNG KIQKQSRPKP 300 SLKQPPIKVA RKSSSASPAN ISIAAKKPWP VKEENYNEED SEETEEERDD VGDGWRYGEN 360 DDDDEETEED E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

METHMAHHLF ERRPIYKSKA PAAKWFKEWV PQDVVATGGK CYLLKWVNEA TLKALKEKPK  60
EPEVPVPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDYVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE  180
YKLKNHIASS HQKNSTPDAP KYTPPVEKPM KTPKSSSAAY ASSSSDRPYS CPYEGCDKSY  240
IHEYKLNLHL RNMHPGHFPE DNAKNAQSTA DNEMDEGSDQ DAYAAKRGNG KIQKQSRPKP  300
SLKQPPIKVA RKSSSASPAN ISIAAKKPWP VKEENYNEED SEETEEERDD VGDGWRYGEN  360
DDDDEETEED E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-139	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT30124