PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30208
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 300aa    MW: 34704.4 Da    PI: 5.7119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30208genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll++ v+ +G g+W++ a+  g++Rt k+c++rw++yl
         OIT30208 24 KGPWTIEEDNLLIHHVTSHGEGRWNALAKSSGLKRTWKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding50.93.5e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
         OIT30208  77 RGNLSPQEQLLILELHSKWGNR-WSKIAEHLP-GRTDNEIKNYWRT 120
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MRKDRLAKST STNSSSEDAF ELRKGPWTIE EDNLLIHHVT SHGEGRWNAL AKSSGLKRTW  60
KSCRLRWLNY LKPDVKRGNL SPQEQLLILE LHSKWGNRWS KIAEHLPGRT DNEIKNYWRT  120
RVQKQARQLK VDSNSTRFLE AVKSFWIPRL LEKMEQYCPS SSSPTSSSST ITIEKQNSAF  180
PSSLINEQES LQSLNPKPNT CQEISPRFYS PESNSMAENV TSFNGNSVYS NSTQDDCYHL  240
ETSSYFEEQP YFSALESQNM SISEYNEMAE ANWFTDDEVA DSLWNIDEFW QFRNIGDVGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-82MYB family protein