PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30233

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 290aa MW: 31984.3 Da PI: 8.3574

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30233	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	61.5	1e-19	208	242	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l OIT30233 208 CQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRL 242 *******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MKMEALDPSA ASCFMVDVDD DLLNFSLEDE TVLLDDDEKT TNSLTKHKHP FSSSYSSSLD 60 SSNPVLSLLP SQQHPECIEE ELEWLSNKDA FPAVEFGILA DNPSIVFDHH SPVSVLENSS 120 STCNSSGNGS ANANAYMSCC ASLKVPVNYP VRARSKRRRR RRRGSFADLP SEHCMLVNKP 180 SFKIVKQREP LLSLPMNSAK SASIGRRCQH CGADKTPQWR AGPLGPKTLC NACGVRYKSG 240 RLLPEYRPAN SPTFSPTVHS NSHRKVLEMR KQKIGVGGMM IHEACGYRVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	163	RSKRRRRRRR
2	156	161	KRRRRR
3	156	162	KRRRRRR
4	157	163	KRRRRRR
5	157	162	RRRRRR
6	157	163	RRRRRRR
7	158	163	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	6e-45	GATA family protein

Link Out ? help Back to Top
Ensembl	OIT30233