PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30332

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 353aa MW: 38282.4 Da PI: 8.852

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30332	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.9	4.4e-39	59	177	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ + + s +ss++ s+++ OIT30332 59 QPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSsLNISLRSSGNISRHNyltqnlshgvglf 159 689****************************************************************9977766666666666333335555555666666 PP TCP 89 kaaksaa.kskksqksaa 105 ++++s++ + +++ + + OIT30332 160 SSENSSMgLNIFPSGNVN 177 333333334444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MIMETGHDNY GNSMQRPNFP LQLLEKREDP ICSTSIYPYP STDASADQKS NQEPNKKPQP 60 KRTSTKDRHT KVDGRGRRIR MPATCAARVF QLTKELGHKS DGETIEWLLQ QAEPSVIAAT 120 GTGTIPANYS SLNISLRSSG NISRHNYLTQ NLSHGVGLFS SENSSMGLNI FPSGNVNMNL 180 NAMLQAKQEL YCDREGNNIG RKRRSENQDL LPVLQNYHMG NNYMLQTSNS GSIPASYQGQ 240 IPATTLYMMT NNSSHDPNSM WTFPSTIGNS NIRGGSMTNS GLLNFMNSHP SVLGQHSGGG 300 GGGGGGRGTV VEGQLGMLTA MNSLRQIGHA SGSSNQHNGA DDHGNNGHHC HHS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MIMETGHDNY GNSMQRPNFP LQLLEKREDP ICSTSIYPYP STDASADQKS NQEPNKKPQP  60
KRTSTKDRHT KVDGRGRRIR MPATCAARVF QLTKELGHKS DGETIEWLLQ QAEPSVIAAT  120
GTGTIPANYS SLNISLRSSG NISRHNYLTQ NLSHGVGLFS SENSSMGLNI FPSGNVNMNL  180
NAMLQAKQEL YCDREGNNIG RKRRSENQDL LPVLQNYHMG NNYMLQTSNS GSIPASYQGQ  240
IPATTLYMMT NNSSHDPNSM WTFPSTIGNS NIRGGSMTNS GLLNFMNSHP SVLGQHSGGG  300
GGGGGGRGTV VEGQLGMLTA MNSLRQIGHA SGSSNQHNGA DDHGNNGHHC HHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-52	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT30332