PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30354
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 197aa    MW: 22527.4 Da    PI: 6.8986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30354genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.22.4e-3710109199
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
               aCaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++k+l++l  ++++ dam+s+++e+++r + P+yG+v+ il l+qql+ + +e +++ +
  OIT30354  10 ACAACKYQRRKCSQQCVLASYFPADQPKKFQNAHRLFGVRNIVKTLEQLdGDDQKADAMKSIIFESDMREKFPIYGCVECILYLRQQLQLALQEREYVYT 109
               7************************************************445569**********************************99999888765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MTKGETGRPA CAACKYQRRK CSQQCVLASY FPADQPKKFQ NAHRLFGVRN IVKTLEQLDG  60
DDQKADAMKS IIFESDMREK FPIYGCVECI LYLRQQLQLA LQEREYVYTQ LAIYRQQHLR  120
LSSSENNSVG NGIMTAPFFS SDSESSQGII YPDFDKHNSL AYPTSNHVFR LGSQEQQEVS  180
RDIESLTLFN SSLVDDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-34LBD family protein