PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30396
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 215aa    MW: 24246.6 Da    PI: 7.6595
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30396genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY202.71.5e-6261672165
     YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
               ++f+  + +CyvqC++C+til+vsvP +sl  k+vtvrCGhCtsllsvnl+k+s +     hl  sl+++ +++l+v++e+++ n+++ +s+ + v+s+  
  OIT30396   6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTSLLSVNLMKTSLV---PLHLFASLNQSEQQKLEVDKEDIDANKKSVDSEISFVASSD- 102
               789999***********************97369****************998854...346667888889999999********999999999999988. PP

     YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
               +e++ e+v  v++ v++PPekrqr+Psayn+fikeei+r+k+  P+++h++afs+aaknWahfP+
  OIT30396 103 EEDQIENVVPVYQvVNKPPEKRQRAPSAYNCFIKEEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 167
               555555555577769************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MSALNHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTSL LSVNLMKTSL  60
VPLHLFASLN QSEQQKLEVD KEDIDANKKS VDSEISFVAS SDEEDQIENV VPVYQVVNKP  120
PEKRQRAPSA YNCFIKEEIK RLKTIYPNMT HKQAFSTAAK NWAHFPPSQH RGDRESCSLG  180
DRKMPKISAA RNSQVPRDCN GFFERKDSNM TPSNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-67YABBY family protein