PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30587

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 350aa MW: 39679.7 Da PI: 7.8058

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30587	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.3e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ +G +W+++++ g+ R++k+c++rw +yl OIT30587 13 RGLWSPEEDEKLTRHITTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	49.9	7.5e-16	66	108	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w+ OIT30587 66 RGCFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 108 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLTRHITT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGCFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSA IKKKLIAQGF 120 DPNTHNLLSR NHHQNNQIKS SCCKPKTCNH PNSTSVFTNL SSRKHVISMD IIKASLAASI 180 LPPIATTTTI TLPHSQTNPC KSSLTTTTYN YMNPICLPTT TNIENSNLAT IEYHQNQTSS 240 NNLLSSSSSL TPSGFGIIND NCMWDVEPQF NGKEEMQLVQ QQGAQLLQLQ ENICQEQVYK 300 VNHEFNNNGQ MAENVTFDNS NFDFEFVDSA LMPCEIYTNV NSIDQLAWDC

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGHHCCSKQK VKRGLWSPEE DEKLTRHITT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGCFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSA IKKKLIAQGF  120
DPNTHNLLSR NHHQNNQIKS SCCKPKTCNH PNSTSVFTNL SSRKHVISMD IIKASLAASI  180
LPPIATTTTI TLPHSQTNPC KSSLTTTTYN YMNPICLPTT TNIENSNLAT IEYHQNQTSS  240
NNLLSSSSSL TPSGFGIIND NCMWDVEPQF NGKEEMQLVQ QQGAQLLQLQ ENICQEQVYK  300
VNHEFNNNGQ MAENVTFDNS NFDFEFVDSA LMPCEIYTNV NSIDQLAWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-80	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT30587