PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30622
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 252aa    MW: 28717.3 Da    PI: 9.8324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30622genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-151199198
              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
              ffkv++p   + ++ l +p +f+ + +g+k e  + tl++    +W+v++   +++++ +++ kGW++Fv+  +L+ gDf vF++ g+++f   v++++
  OIT30622 11 FFKVMVP---GFHAKLPIPPDFCLKLKGEKSE--KGTLKH-GKGTWNVEI--GRSKNGvMWFDKGWEQFVQNYNLRIGDFAVFEHLGNMNF--SVSLLD 99
              6677744...4456699******999887555..566666.4569*****..777777799************************999999..777766 PP
2B347.63e-151652401488
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                 l +p +f+ ++ +   +++ +tl+ +sg s  v l+++ ++++  +++t+GW++F  +n+Lk+gD+++F+ d++ s
  OIT30622 165 PYLHIPTEFCHSNALL--QNTIITLTGPSGISCPVSLRICSGGKTlyVIMTTGWRNFFLSNKLKVGDVCIFQIDRTnS 240
               4589******999777..5678***************6655555588999**********************887634 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MENELPISRR FFKVMVPGFH AKLPIPPDFC LKLKGEKSEK GTLKHGKGTW NVEIGRSKNG  60
VMWFDKGWEQ FVQNYNLRIG DFAVFEHLGN MNFSVSLLDS TGCDKKYLML EDGKQQQQVP  120
SQVKSPECRI EKRKPEGDVL LHQYVKGSSE FTARIKEYNV RKRSPYLHIP TEFCHSNALL  180
QNTIITLTGP SGISCPVSLR ICSGGKTLYV IMTTGWRNFF LSNKLKVGDV CIFQIDRTNS  240
DSKSITMNVR VM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.14e-19B3 family protein