PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30652

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 699aa MW: 76889 Da PI: 6.8524

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30652	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg OIT30652 280 PCPEFRK-GACQRGDMCEYAHG 300 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MNINHLTVET EDSFVSLLEL AANNDIEAFK RWMEHDLSSI HEVGLWYGRQ KGSRQMVLEH 60 RTPLLVAATY GSIDVLKLIL SLPEVDLNQS CGRDKSTALH CAASGGSPNA VDAVKMLLEA 120 GADPNSEDAN GHRPRDVIVV SPKFHSTESS LESLLKSDTT GKCSLRLSTA TSNSNSPPLS 180 PSPGNRSPSS TSDSTSSPKS AKSDDLPVSS TSEKKEYPID PSLPDIKNSI YSTDEFRMFS 240 FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT KCNRRVCFFA HMQEELRPLY VSTGSAVPSP RSNTSAANAM 360 DFAAAMGLIP GSPSSVRVMS PLPFTPPMSP SANGVSNMSW PQPNVPALHL PGSNFQSSRL 420 RSSLHARDIR AVDFNFDMQQ QQQFINEFSC LSQSSVNANS LNRLAHPKTL TPSNLEDLFS 480 AESSSPRYSD QALAQAVFSP THKSAVLNQF QQQQQSMLSP INTKFSPINV DNPLLQASFG 540 VQTPGRMSPR GMEPISPMSS RVSTLSQREK QQQFRSLSSR DLGSNASAVI GSPVDTWSKW 600 GSSTGNADWA VTTEEFGRLK RSSSFELANN GEEPDLSWVQ SLVKESPQEL KDKAASRVLG 660 LAGSTADLAE DSTSNSQIEQ FDQLNAWMEQ MKLDKLMAQ

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MNINHLTVET EDSFVSLLEL AANNDIEAFK RWMEHDLSSI HEVGLWYGRQ KGSRQMVLEH  60
RTPLLVAATY GSIDVLKLIL SLPEVDLNQS CGRDKSTALH CAASGGSPNA VDAVKMLLEA  120
GADPNSEDAN GHRPRDVIVV SPKFHSTESS LESLLKSDTT GKCSLRLSTA TSNSNSPPLS  180
PSPGNRSPSS TSDSTSSPKS AKSDDLPVSS TSEKKEYPID PSLPDIKNSI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT KCNRRVCFFA HMQEELRPLY VSTGSAVPSP RSNTSAANAM  360
DFAAAMGLIP GSPSSVRVMS PLPFTPPMSP SANGVSNMSW PQPNVPALHL PGSNFQSSRL  420
RSSLHARDIR AVDFNFDMQQ QQQFINEFSC LSQSSVNANS LNRLAHPKTL TPSNLEDLFS  480
AESSSPRYSD QALAQAVFSP THKSAVLNQF QQQQQSMLSP INTKFSPINV DNPLLQASFG  540
VQTPGRMSPR GMEPISPMSS RVSTLSQREK QQQFRSLSSR DLGSNASAVI GSPVDTWSKW  600
GSSTGNADWA VTTEEFGRLK RSSSFELANN GEEPDLSWVQ SLVKESPQEL KDKAASRVLG  660
LAGSTADLAE DSTSNSQIEQ FDQLNAWMEQ MKLDKLMAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT30652