PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30687

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 31908.1 Da PI: 8.2081

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30687	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	118	172	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k OIT30687 118 RKKLRLTKEQSAVLEDNFKEHSTLNPKQKLALAKRLGLRARQVEVWFQNRRARTK 172 678899***********************************************98 PP
2	HD-ZIP_I/II	123	1.5e-39	118	207	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l OIT30687 118 RKKLRLTKEQSAVLEDNFKEHSTLNPKQKLALAKRLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCVENLTEENRRLQKEVQELR-AL 207 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MEDLGLSLSL SFPENRIVTP VHLNLIRKTS WTDSFPSSDR NSETCRVETR TFLKGIDVNR 60 LPATADAEEE AGVSSPNSTI SSVSGNKRND REPNCDEHEM ERACSRGISD EEDGETCRKK 120 LRLTKEQSAV LEDNFKEHST LNPKQKLALA KRLGLRARQV EVWFQNRRAR TKLKQTEVDC 180 EFLKRCVENL TEENRRLQKE VQELRALKLS PQFYMQMTPP TTLTMCPSCE RVASGPTSTP 240 VNLRVGPPQQ QPMPLNLWAT TPISQGQFGQ MDSYPTLARQ K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	175	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	8e-91	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT30687