PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30891
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 537aa    MW: 61664.4 Da    PI: 7.0755
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30891genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.7e-29111196187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  OIT30891 111 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 196
               8*************************************999*****************************98..55667*******85 PP
2trihelix58.22.1e-18403477275
  trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
               W+++e+  Li++r+++e+r+++   + ++ lWee+++km+  g+ +s+++Ck+kw+++n++  k+++ +k+++ +s
  OIT30891 403 WPESEITRLIQLRTSLESRFQQigFSGDEVLWEEIAAKMALLGYDKSAIMCKNKWDSINGYLMKCNKKRKENS-TS 477
               *********************8655899***************************************999862.22 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MEDQYGMADL RQYMNGRQLF ASIQPPELLP AAAHQHRNLI GPGHHQYEMV MGLAQVSAHG  60
LPPHHQQHHE FLPDSSTTAT AAAAAAATTS SAGFSGMEME AAAGGGDGSG RWPRQETLTL  120
LEIRSRLDSK FKEANQKGPL WDEVSRIMSE EHGYQRTGKK CREKFENLYK YYKKTKEGKA  180
GRQDGKHYRF FRQLEALYGE TSNINASSVS ESHHVESHFP YNPVNNSSNN NNNNYDPHNF  240
HQLAPKLSDS LSLSNSSDFN TTSSDDSDVN ENSKEKSKKR RGKRSLKAKI KDFIDGQMRK  300
LMEKQEAWFE KMMKMIENKE KERILREEEW RNQEKIRIEK EHKFWANERA WIEARDATLM  360
DALHKLTSKE SKSSITTNPS SDQETEFRSL NENQNDNVKD EHWPESEITR LIQLRTSLES  420
RFQQIGFSGD EVLWEEIAAK MALLGYDKSA IMCKNKWDSI NGYLMKCNKK RKENSTSSCY  480
NVQINNEQQG RSYCEARHVS NDQNVISDGS CFRYLMGDAD QNLWENYDLK LSKGGDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283KKRRGK
2278304KKRRGKRSLKAKIKDFIDGQMRKLMEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-111Trihelix family protein