PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30905
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 318aa    MW: 35011.5 Da    PI: 8.7755
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30905genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.59.6e-1559149186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W++  +++Liea  +   +l+rg+l++++W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ + +  s +p+f+ l+
  OIT30905  59 CWSEAATHTLIEAWGSHYLELKRGNLRQKHWQEVANAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSHGRYASPWPFFNGLD 149
               7*************************************999987778889**********************9999999999******998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MSDDDLVASP SSNNNSPSLP PSPSPPPPST NNELVNPPPP PTIPPASTRP SAFPAREDCW  60
SEAATHTLIE AWGSHYLELK RGNLRQKHWQ EVANAVNALH GHTKKQYRTD IQCKNRIDTL  120
KKKYKIEKAR VSQSHGRYAS PWPFFNGLDA LIGDNFKPSP APVTVAPRRK TPPMLLPPPS  180
AVPVGPRSKR PAAAMEDAVS RRNFSAMAAA AAASEESDEE EESETSSPAA ISLTGARKEE  240
SGALAEGCSR LAEAIGRFAE IYERVEDAKQ RQMVELEKQR MQFAKDLEIQ RMKLIMESQV  300
QLEKLKRAKS NSQADGYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-69Trihelix family protein